Structure and function of membrane proteins and their interactions with small molecules and the lipid bilayer
Co-workers: Dr. Jolyon Claridge, Dr. José Ortega-Roldan, Felipe Ossa, Muhd Mohd Kipli, Jose Carlos González-Álvarez, Vitan Blagotinsek.
We are interested in understanding the structure and function of membrane proteins, especially those implicated in human health and disease. More specifically, our research aims to identify the molecular basis of the interactions between membrane proteins and the components of the membrane bilayer (e.g., lipids and cholesterol), other proteins, and drug-like small molecules; ultimately, we are interested in how these interactions lead to events on the cellular level. Current research is focused on three systems:
Influenza matrix protein 2: One system under investigation is the matrix protein 2 (M2) from influenza. The influenza virus is easily spreadable between people and can result in severe illness and death, particularly for young children and older adults. Globally, 3-5 million people suffer severe illness and 250,000-500,000 people die from influenza every year (World Health Organization estimates). We are studying the lipid interactions of the ‘swine flu’ M2 to better understand its role in new virus assembly and membrane scission.
Sigma-1 Receptor: A second research area is on the human Sigma-1 Receptor (S1R), which is found primarily in the endoplasmic reticulum (ER) and is a ligand-regulated membrane protein chaperone involved in the ER stress response. The activity of S1R, which includes the regulation of ion channels at the plasma membrane, has been linked to a range of diseases of the central nervous system (CNS), including schizophrenia, Alzheimer’s and Parkinson’s, amnesia, depression, amyotrophic lateral sclerosis, and addiction. As a result, S1R is being
explored as a pharmaceutical target, and our aim is to facilitate this research by providing a greater understanding of the S1R structure and dynamics, and its interactions with other proteins and small molecules.
DP1/Reticulon family: A third research area is the DP1/Reticulon family of integral membrane proteins. Members of this protein family are responsible for maintaining the high membrane curvature of the tubular ER, and mutations in these proteins are implicated in neuronal diseases such as Hereditary Spastic Paraplegia. To gain insight into how this class of proteins curve and remodel lipid membranes – and how they malfunction in disease – we have focused on the protein Yop1p, which is a DP1 family member from Saccharomyces cerevisiae.
A central technique of our laboratory is solution nuclear magnetic resonance (NMR) spectroscopy, which allows atomic-level studies of protein structures and their interactions with lipids and small molecules. NMR can be uniquely informative in situations where the molecular conformations or interactions are dynamic or heterogeneous. However, a wide variety of biochemical and biophysical tools are brought to bear on the research questions, including electron microscopy, circular dichroism, fluorescence, electron microscopy, and analytical ultracentrifugation. We also have collaborations with various research groups around the world including virologists, cell biologists, and computational biologists.
- Ma, J., Domicevica, L., Schnell, J. R., Biggin, P. C. (2015) Position and orientational preferences of drug-like compounds in lipid membrane: A computational and NMR approach. Phys. Chem. Chem. Phys., 17(30):19766-76. [PMID: 26153345]
- Ortega-Roldan, J. L., Ossa, F., Amin, N. T., Schnell, J. R. (2015) Solution NMR studies reveal the location of the second transmembrane domain of the human sigma-1 receptor. FEBS Lett., 589(5):659-65. [PMID: 25647032]
- Brady, J. P., Claridge, J. K., Smith, P. G., Schnell, J. R. (2015) A conserved amphipathic helix is required for membrane tubule formation by Yop1p. Proc Natl Acad Sci U S A., 112(7):E639-48. [PMID: 25646439]
- Dixon, E. V., Claridge, J. K., Harvey, D. J., Baruah, K., Yu, X., Vesiljevic, S., Mattick, S., Pritchard, L. K., Krishna, B., Christopher N. Scanlan, C. N., Schnell, J. R., Higgins, M. K., Zitzmann, N., Crispin, M. (2014) Fragments of Bacterial Endoglycosidase S and Immunoglobulin G Reveal Subdomains of each that Contribute to Deglycosylation. J. Biol. Chem. 16;289(20):13876-89. [PMID: 24668806]
- Claridge, J. K, Aittoniemi, J., Cooper, D. M., and Schnell J. R. (2013) Isotropic Bicelles Stabilize the Juxtamembrane Region of the Influenza M2 Protein for Solution NMR Studies. Biochemistry. 52(47), 8420-9. [PMID: 24168642]
- Ortega-Roldan, J. L., Ossa, F., and Schnell, J. R. (2013) Characterization of the human Sigma-1 receptor chaperone domain structure and BiP interactions. J. Biol. Chem. 288(29), 21448-57. [PMID: 23760505]
- Rodriguez, F., Rouse, S. L., Tait, C., Harmer, J., De Riso, A., Timmel, C. R., Sansom, M. S. P., Berks, B. C., and Schnell, J. R. (2013) Structural model for the protein-translocating element of the twin-arginine transport system. Proc. Natl. Acad. Sci. USA, 110(12), E1092. [PMID: 23471988]
- Claridge, J.K. and Schnell, J. R. (2012). Bacterial production and solution NMR studies of a viral membrane ion channel. Methods Mol. Biol. 831, 165-79. [PMID: 22167674]
- Chou, J. J. and Schnell, J. R. (2010). Structure and Mechanism of the M2 Channel. In Influenza: Molecular Virology, Q. Wang and Y. J. Tao, eds. (Norwich, U. K., Horizon Scientific Press). Ch. 6.
- Pielak, R. M., Schnell, J. R. and Chou, J. J. (2009). Mechanism of Drug Inhibition and Drug Resistance of Influenza A M2 Channel. Proc. Natl. Acad. Sci. USA, 106(18), 7379-84. [PMID: 19383794]
- Schnell, J. R. and Chou, J. J. (2008). Structure and Mechanism of the M2 Proton Channel of Influenza A Virus. Nature, 451, 591-595. [PMID: 18235503]
Lab website: http://www.mpi-lab.com
Graduate Student and Postdoctoral Positions: Enquiries with CV are welcome, and applications for FEBS, EMBO, or other fellowships are encouraged.
Figure 1: Schematic of a construct of the influenza M2 protein solubilised in bicelles containing lipid and detergent, which enables observation of protein-lipid interactions.
Figure 2: Schematics showing the secondary structure determined for the Sigma-1 Receptor (top) and Yop1p (bottom) based on a combination of experimental and predicted information.